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E3TAM

Cell counting and classification under the microscope

Application example

In the field image from the microscope camera every cell is located, assigned to one of two classes by staining intensity and shape features, and counted. The class ratio is compared with the defined limit and the result is recorded.

microscope imagingsegmentationclassificationcounting
Information delivered

Total count, class counts and class-B share of every field are written to the sample record; a field above the limit is flagged on the display and the result indicator, and the sample is set aside for re-evaluation.

Cell counting and classification under the microscopeILLUSTRATIVE SIMULATION
Cell counting and classification under the microscope
  1. 01 Position
  2. 02 Acquire
  3. 03 Detect
  4. 04 Classify
  5. 05 Decide
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The stage moves the slide and brings the next field under the objective.

Cell count
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Class B
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Class B share
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Scenes are illustrative simulations; they are not customer references or performance guarantees.

Need

Cells touch or overlap and staining intensity varies from slide to slide; a weakly stained class-B cell looks like class A, and two clustered cells look like one. Cells cut by the field border distort the count.

Solution approach

The stage moves the slide field by field; in each field an image is taken under transmitted light. Cells are segmented from the background, touching cells are separated and counted in a left-to-right sweep. The staining intensity of each cell forms two peaks in the histogram; the threshold between them assigns the cell to class A or B, and the class-B share is compared with the limit.

Process steps

  1. 01

    Position

    The stage moves the slide and brings the next field under the objective.

  2. 02

    Acquire

    The microscope camera captures the field image.

  3. 03

    Detect

    Cells are separated from the background and counted one by one.

  4. 04

    Classify

    Each cell is assigned to class A or B by its staining intensity and shape; the histogram sets the threshold.

  5. 05

    Decide

    The share of class B is compared with the defined limit.

Vision system design

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We test your sample in our laboratory and report on resolution, optics and lighting selection.

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Esentepe / İstanbul · İkitelli OSB Laboratory
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